A GENOMIC REFERENCE DATABASE FOR MARINE SPECIES



Introduction

The marine environment is extremely diverse and by far the largest habitat on Earth. Unlike marine prokaryotes, very little genomic data from marine organisms are available so far. In this context, we tends to develop a genomic reference database dedicated to micro-eukaryotic marine species transcriptomes, namely METdb. METdb is a comprehensive resource for Marine Eukaryotes Transcriptomes. All data is processed following the same standardized de-novo assembly and annotation pipelines (https://github.com/mscheremetjew/workflow-is-cwl/tree/assembly/), providing a useful reference for biologists.


The database has the following record counts

Organisms Strains Transcriptomes WoRMS Taxonomy matches NCBI Taxonomy database matches PR2 Taxonomy matches
348 463 464 325 346 348

Sample Locations

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Details Phylum Class Order Family Genus Species Strain name Strain name synonym NCBI ID WoRMS ID Reads Type